专家人才库数据----中国科学院上海巴斯德研究所

Principal investigator2016

Name:	Jie CUI	Gender:
Education:	2008-2011, Ph.D., East China Normal University
Academic degree:	Ph.D	Academic title:	Principal Investigator
Departments:	Pathogen Bioinformatics Unit	Discipline:	Microbiology
Phone:	021-54923135	E-mail:	jcui@ips.ac.cn
Mailing Address:	Life Science Research Building, 320 Yueyang Road, Xuhui District, 200031

Curriculum vitae:
2019-present, Principal investigator, Institut Pasteur of Shanghai, CAS 2014-2016, Research Fellow, Duke-NUS Graduate Medical School 2012-2013, Postdoctoral fellow, The University of Sydney 2011-2012, Postdoctoral Researcher, The Pennsylvania State University

Research direction:
Research Focus 1. Endogenous retroviruses/retroelements & diseases 2. Exploring virosphere/virome 3. Evolutionary occurrence of pathogenicity 4. Evolution and molecular epidemiology of emerging infectious diseases

Research direction:

Research Focus

1. Endogenous retroviruses/retroelements & diseases

2. Exploring virosphere/virome

3. Evolutionary occurrence of pathogenicity

4. Evolution and molecular epidemiology of emerging infectious diseases

Research progress:
*Selected Publications (^Corresponding author)** 1. Chen Y, Zhang YY, Wei X, Cui J. (2021) Multiple infiltration and cross-species transmission of foamy viruses across Paleozoic to Cenozoic era. J Virol. 92:e00921-17. Online ahead of print. 2. Zhang YY, Chen Y, Wei X, Cui J. (2021) Viromes in marine ecosystems reveal remarkable invertebrate RNA virus diversity. Sci China Life Sci. 64, https://doi.org/10.1007/s11427-020-1936-2. 3. Tang X, Wu C, Li X, Song Y, Yao X, Wu X, Duan Y, Zhang H, Wang Y, Qian Z, Cui J^, Lu J^. (2020) On the origin and continuing evolution of SARS-CoV-2. Natl Sci Rev. 7:1012-1023. 4. Wei X, Li X, Cui J^. (2020) Evolutionary perspectives on novel coronaviruses identified in pneumonia cases in China. Natl Sci Rev. 7:239-242. 5. Chen M, Tachedjian M, Marsh GA, Cui J^, Wang LF. (2020) Distinct Cell Transcriptomic Landscapes Upon Henipavirus Infections. Front Microbiol.* 11:986. 6. Chen Y, Wei X, Zhang G, Holmes EC, Cui J^. (2019) Identification and evolution of avian endogenous foamy viruses. Virus Evol. 5:vez049. 7. Wei X, Chen Y, Duan G, Holmes EC, Cui J^. (2019) A reptilian endogenous foamy virus sheds light on the early evolution of retroviruses. Virus Evol. 5:vez001. 8. Cui J, Li F, Shi ZL^. (2019) Origin and evolution of pathogenic coronaviruses. Nature Rev Microbiol. 17:181-192. 9. Wei X, Chen M, Cui J^. (2017) Bayesian evolutionary analysis for emerging infectious disease: an exemplified application for H7N9 avian influenza viruses. Sci China Life Sci. 60:1392-1395. 10. Hu B, Zeng LP, Yang XL, Ge XY, Zhang W, Li B, Xie JZ, Shen XR, Zhang YZ, Wang N,Luo DS, Zheng XS, Wang MN, Daszak P, Wang LF, Cui J^, Shi ZL^. (2017) Discovery of a rich gene pool of bat SARS-related coronaviruses provides new insights into the origin of SARS coronavirus. PLoS Pathog. 13:e1006698. 11. Wang H, Zhao Y, Chen M^, Cui J^. (2017) Identification of Novel Long Non-coding and Circular RNAs in Human Papillomavirus-Mediated Cervical Cancer. Front Microbiol. 8:1720. 12. Du Y, Chen M, Yang J, Jia Y, Han S, Holmes EC, Cui J^. (2017) Molecular evolution and emergence of H5N6 avian influenza virus in central China. J Virol*. 91:e00143-17.

Research progress:

Selected Publications (^*Corresponding author)

1. Chen Y, Zhang YY, Wei X, Cui J*. (2021) Multiple infiltration and cross-species transmission of foamy viruses across Paleozoic to Cenozoic era. J Virol. 92:e00921-17. Online ahead of print.

2. Zhang YY, Chen Y, Wei X, Cui J*. (2021) Viromes in marine ecosystems reveal remarkable invertebrate RNA virus diversity. Sci China Life Sci. 64, https://doi.org/10.1007/s11427-020-1936-2.

3. Tang X, Wu C, Li X, Song Y, Yao X, Wu X, Duan Y, Zhang H, Wang Y, Qian Z, Cui J^*, Lu J^*. (2020) On the origin and continuing evolution of SARS-CoV-2. Natl Sci Rev. 7:1012-1023.

4. Wei X, Li X, Cui J^*. (2020) Evolutionary perspectives on novel coronaviruses identified in pneumonia cases in China. Natl Sci Rev. 7:239-242.

5. Chen M, Tachedjian M, Marsh GA, Cui J^*, Wang LF*. (2020) Distinct Cell Transcriptomic Landscapes Upon Henipavirus Infections. Front Microbiol. 11:986.

6. Chen Y, Wei X, Zhang G, Holmes EC, Cui J^*. (2019) Identification and evolution of avian endogenous foamy viruses. Virus Evol. 5:vez049.

7. Wei X, Chen Y, Duan G, Holmes EC, Cui J^*. (2019) A reptilian endogenous foamy virus sheds light on the early evolution of retroviruses. Virus Evol. 5:vez001.

8. Cui J, Li F, Shi ZL^*. (2019) Origin and evolution of pathogenic coronaviruses. Nature Rev Microbiol. 17:181-192.

9. Wei X, Chen M, Cui J^*. (2017) Bayesian evolutionary analysis for emerging infectious disease: an exemplified application for H7N9 avian influenza viruses. Sci China Life Sci. 60:1392-1395.

10. Hu B, Zeng LP, Yang XL, Ge XY, Zhang W, Li B, Xie JZ, Shen XR, Zhang YZ, Wang N,Luo DS, Zheng XS, Wang MN, Daszak P, Wang LF, Cui J^*, Shi ZL^*. (2017) Discovery of a rich gene pool of bat SARS-related coronaviruses provides new insights into the origin of SARS coronavirus. PLoS Pathog. 13:e1006698.

11. Wang H, Zhao Y, Chen M^*, Cui J^*. (2017) Identification of Novel Long Non-coding and Circular RNAs in Human Papillomavirus-Mediated Cervical Cancer. Front Microbiol. 8:1720.

12. Du Y, Chen M, Yang J, Jia Y, Han S, Holmes EC, Cui J^*. (2017) Molecular evolution and emergence of H5N6 avian influenza virus in central China. J Virol. 91:e00143-17.

Laboratory members:
Research Associate/Assistant: Zixuan Han; Yicong Chen; Meng Ren Ph.D. Candidates: Xiaojing Wang; Meng’en Liao; Yian Li; Xiang Li